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Taxon-level significance frequency across prevalence thresholds

Source: R/gfc_flow.R
taxon.sig.frequency.Rd

Taxon-level significance frequency across prevalence thresholds

Usage

taxon.sig.frequency(
  results,
  fdr.level = 0.1,
  tables.name = NULL,
  fdr.col = "FDR",
  logfc.col = "logFC"
)

Arguments

results

basin.prev.eval() result object.

fdr.level

FDR cutoff used to count a taxon as significant.

tables.name

Optional; name of results element that stores a list of per-prevalence DA tables. If NULL, tries to auto-detect.

fdr.col

Column name for FDR in each DA table.

logfc.col

Column name for logFC in each DA table.

Value

data.frame with per-taxon summaries: n.tested, n.sig, sig.freq, longest.sig.run, min.fdr, mean.logfc, sign.pos.freq, sign.flip.count.