Provides a comprehensive summary of a gradient flow structure including information about local extrema, basins, trajectories, cells, and Jaccard indices between basins.
Usage
# S3 method for class 'ggflow'
summary(object, ...)Value
An object of class "summary.ggflow" containing:
- n_extrema
Total number of extrema
- n_maxima
Number of local maxima
- n_minima
Number of local minima
- maxima
Data frame with information about local maxima
- minima
Data frame with information about local minima
- n_trajectories
Number of trajectories (if available)
- trajectory_types
Table of trajectory type counts
- avg_trajectory_length
Average trajectory length
- connectivity
Matrix showing min-max connections
- n_cells
Number of gradient flow cells
- cell_sizes
Summary statistics of cell sizes
- n_ascending_basins
Number of ascending basins
- n_descending_basins
Number of descending basins
- ascending_basins_jaccard_index
Jaccard similarity matrix for ascending basins
- descending_basins_jaccard_index
Jaccard similarity matrix for descending basins
Examples
if (FALSE) { # \dontrun{
flow <- construct.graph.gradient.flow(adj.list, weight.list, y, scale)
summary(flow)
} # }