Identify Bottleneck Vertices in a Cell

Identifies vertices through which a large fraction of trajectories must pass. These represent obligate intermediate states in the transition from minimum to maximum.

Usage

madag.bottlenecks(x, max.vertex, min.fraction = 0.5, ...)

Arguments

x

A madag object from construct.madag.

max.vertex

Integer. The 1-based index of the maximum vertex defining the cell.

min.fraction

Numeric. Minimum fraction of trajectories passing through a vertex for it to be considered a bottleneck. Default is 0.5.

...

Additional arguments (currently ignored).

Value

Integer vector of 1-based indices of bottleneck vertices.

See also

construct.madag